Parsimony Analysis

Some help messages indicate that summary statistics are reported (e.g.,bipartition_support_stats). Summary statistics include mean, median, 25th percentile,75th percentile, minimum, maximum, standard deviation, and variance. These functionstypically have a verbose option that allows users to get the underlying dataused to calculate summary statistics. It refers to a characteristic for which the number of character-state evolutionary changes of at this site depends on the topology of the tree. The charactetistics can take on multiple types of data, including morphological (such as the presence of wings, tentacles, etc.) or molecular information such as sequences of DNA or proteins. Here’s another example that is designed to look like their newspaper.
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If there are no putatively spurious sequences, "None" is reported. Determines potentially spurious homologs using branch lengths. Calculate summary statistics among patristic distances in a phylogeny. This can help modify reference trees when conducting simulationsor other analyses. Calculate RCVT (relative composition variability, taxon) for an alignment. Calculate RCV (relative composition variability) for an alignment.
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